PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g04660.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 421aa    MW: 46097.5 Da    PI: 7.0303
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g04660.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.81.3e-15146192455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Vradi11g04660.1 146 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 192
                      6*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.1E-20139202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-20139203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.86142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.22E-16145196No hitNo description
PfamPF000104.3E-13146192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MGDMYHFDKN LSSQDEISLF LRQILLRSSP SSSSSPHSVP GSCNSNVSHQ NVNSHASFTP  60
SHLQHAKISN LGSTASFLSP SATCGSFKAQ TASAANVSSS SVLVSENEND DYDCESEEGV  120
EALAEELPTK PVPSRSSSKR SRAAEVHNLS EKRRRSRINE KMKALQNLIP NSNKTDKASM  180
LDEAIEYLKQ LQLQVQMLSM RNGLTLHPMC FPEGLQPLQL SQMGMELSER NRSTPLNMTA  240
TLPLHQENPL HYTSNLPSKH ILPNQPSAPY PSFINNPETS FGLESRIQSE TKPLQHKGGS  300
SGPIRGEDIL HYQQQPSAIH SDANTLGGSQ VVKEFESGTT VSLSFDTQTC EPCIGGREQS  360
GVIIRNSEAN IVVTSQLMQR GKGGGSGNSK TEIFEVYKFS LAMLFEFWFP RKSRNTNPLS  420
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Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014519314.10.0PREDICTED: transcription factor SPATULA-like
TrEMBLA0A0S3T4R70.0A0A0S3T4R7_PHAAN; Uncharacterized protein
STRINGGLYMA11G05810.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.13e-41bHLH family protein